I’ve been working for some time with the PubChem Bioassay collection – a set of 1293 assays that cover a range of techniques (enzymatic, phenotypic etc.), targets and sizes (from 20 molecules to 200,000 molecules). In addition, some assays are primary, high-throughput assays whereas a number of them are smaller, confirmatory assays. While an extremely [...]
Posts Tagged ‘text mining’
Annotating Bioassays
Posted in cheminformatics, text mining, visualization, tagged annotation, database, go, network, pubchem, text mining, visualization on January 25, 2009 | 1 Comment »
Locality of References in a Paper
Posted in text mining, tagged bibliometrics, sliding window, text mining on September 30, 2008 | 3 Comments »
The other day I was reading a paper and as is my habit, while reading I flip to see what papers are being cited. Since this was an ACS journal, the references are listed in the order that they occur in the text. When the authors were discussing a point in the paper, they’d usually [...]
