Posts Tagged ‘qsar’

Using the model deployment and prediction service, I put up the two linear regression models I had built so far (described in more detail here) While REST is nice, a simple web page that allows you to paste a set of SMILES and get back predictions is handy. So I whipped together a simple interface to the prediction service, allowing one to select a model, view the author-generated description and a get a nice (sortable!) table of predicted values. View it here. As noted in my previous post it’s not going to be very fast, but hopefully that will change in the future.

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Over the past few days I’ve been developing some predictive models in R, for the solubility data being generated as part of the ONS Solubility Challenge. As I develop the models I put up a brief summary of the results on the wiki. In the end however, we’d like to use these models to predict the solubility of untested compounds. While anybody can send me a SMILES string and get back a prediction, it’s more useful (and less work for me!) if a user can do it themselves. This requires that the models be deployed and made available as a web page or a service. Last year I developed a series of statistical web services based on R. The services were written in Java and are described in this paper. Since I’m working more with REST services these days, I wanted to see how easy it’d be to develop a model deployment system using Python, thus avoiding a multi-tiered system. With the help of rpy2, it turns out that this wasn’t very difficult.


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